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After a thorough peer review, a total of 87 abstracts were accepted for presentation at the 13th ISCB Student Council Symposium, 2017. This year, we will be having three types of presentations namely, (i) Oral presentation, (ii) short talks (flash talk) (iii) poster presentations.

Oral Talks Flash Talks Poster Presentations

Following abstracts were accepted for an oral presentation and a poster presentation

# Reference Work Title
362SCS3482IB Fidelity of contig spectra based community modelling for estimating viral diversity measures using metaviromes

Submitted by Damayanthi Herath
Affiliation: University of Melbourne
379SCS3484GF Reducing Noise in Hi-C Interaction Matrices at Restriction Fragment Resolution

Submitted by Christopher JF Cameron
Affiliation: McGill University
399SCS3507NC SequenceServer: a modern graphical user interface for BLAST

Submitted by Anurag Priyam
Affiliation: Queen Mary University of London
402SCS3510JL Determining the function of the Apicomplexan 6-Cys/SRS protein family: A Structural and Evolutionary Understanding of Pathogen Invasion

Submitted by Eli Draizen
Affiliation: Boston University
405SCS3513CB Integrating Diverse Transcriptomic Alterations to Identify Cancer-Relevant Genes and Signatures

Submitted by Natalie Davidson
Affiliation: ETH Zurich
415SCS3524CH scTree: reconstructing complex cellular lineage trees from single-cell RNA-seq data

Submitted by Rodrigo Gonzalo Parra
Affiliation: Max Planck Institute for Biophysical Chemistry
430SCS3540LK The impact of native state switching on protein sequence evolution

Submitted by Avital Sharir-Ivry
Affiliation: McGill University

Following abstracts were accepted for a short flash talk and a poster presentation

# Reference Work Title
366SCS3467CJ Helminth secretomes reflect different lifestyles and parasitized hosts

Submitted by Yesid Cuesta-Astroz
369SCS3471FQ A comprehensive meta-analysis of the induced immediate early response reveals a conserved order of promoter activation

Submitted by Annalaura Vacca
Affiliation: Edinburgh University
373SCS3476AC Long read sequencing of two Phytophthora ramorum isolates identifies two-speed genome organization

Submitted by Mathu Malar C
Affiliation: Indian Institute of Chemical Biology
376SCS3479FA Predicting Abnormal Circadian Phenotypes in Mouse

Submitted by John Williams
Affiliation: MRC Harwell Institute
377SCS3480EO Discovery of murine tissue specific regulatory drivers and their impact

Submitted by Siddharth Sethi
Affiliation: MRC Harwell Institute
378SCS3483AO Differential network analysis hints at revealing mechanism of actions of combined drug applications

Submitted by Mohamed Hamed
Affiliation: Rostock University Medical Center
385SCS3492NB Intervene: a tool for intersection and visualization of multiple gene or genomic region sets

Submitted by Aziz Khan
Affiliation: University of Oslo
386SCS3493AQ TOPSPIN: a novel algorithm to predict treatment specifical survival in cancer

Submitted by Joske Ubels
Affiliation: UMC Utrecht
348SCS3501LM Homology modeling in a dynamical world

Submitted by Alexander Monzon
Affiliation: UNQ

Submitted by Gabriela Muniz
Affiliation: Evandro Chagas Institute
409SCS3517QL Mining CD8+ T-cell receptor patterns underlying immunogenic peptide recognition

Submitted by Nicolas De Neuter
Affiliation: University of Antwerp
414SCS3523BC Algorithms for gene family silencing using the CRISPR-Cas9 system

Submitted by Gal Hyams
Affiliation: Tel Aviv University
420SCS3529OQ Stochastic Modeling of Gene Regulatory Networks in Escherichia coli

Submitted by Rodrigo Santibáñez
Affiliation: Fundación Ciencia & Vida
438SCS3548OA Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach

Submitted by Mehreen Ali
Affiliation: Institute for Molecular Medicine, University of Helsinki
439SCS3549NM Computational proteogenomic identification of translated fusions and micro structural variations in cancer

Submitted by Yen-Yi Lin
Affiliation: Simon Fraser University
370SCS3472LB Zipping and assembly with limited sets of constraints

Submitted by Maryana Wånggren
Affiliation: Chalmers University of Technology

Following abstracts were accepted for poster presentation

# Reference Work Title Accepted for
363SCS3464AB Computational deconvolution of mixed signals in tumor microenvironment using blind source deconvolution approach

Submitted by Urszula Czerwinska
Affiliation: Institut Curie
Poster Presentation
358SCS3459OA The CD4+ T cell regulatory network mediates inflammatory responses during acute hyperinsulinemia: a simulation study

Submitted by Mariana Esther Martinez-Sanchez
Affiliation: Universidad Nacional Autónoma de México
Poster Presentation
359SCS3460IN Phylogenetic identification and characterization of microbial diversity in Moroccan rivers using a metagenomics approach

Submitted by Sara Ettamimi
Affiliation: University Sidi Mohamed Ben Abdellah, Facuty
Poster Presentation
360SCS3461IF HPC pipeline for metagenomics

Submitted by Trust Odia
Affiliation: Covenant University Bioinformatics Research G
Poster Presentation
361SCS3462OA Identification of Common Molecular Processes for Phenotypes of interest through Common Connection Pattern: A New Method Based on Network Theory

Submitted by Juan David Henao
Affiliation: National University of Colombia
Poster Presentation
364SCS3465LN Darkness and disorder: an insight on the unknown portion of proteomes

Submitted by Nicola Bordin
Affiliation: Universidad Pablo de Olavide
Poster Presentation
365SCS3466OA Pan-cancer classification of gene signatures for their information value and functional redundancy

Submitted by Laura Cantini
Affiliation: Institut Curie, INSERM U900, PSL Research Uni
Poster Presentation
367SCS3468EA Developing a bioinformatics pipeline for optimization of sperm epigenome analysis in mice and men to be used for the identification of epigenetic signatures in sperm associated with environmental perturbation.

Submitted by Deepak Tanwar
Affiliation: McGill University
Poster Presentation
368SCS3470LA Discovery of novel hits against Leishmania spp. crystallized proteins through a structure-based methodology using grid computing

Submitted by Rodrigo Ochoa
Affiliation: Max Planck Tandem Group, Biophysics of Tropic
Poster Presentation
371SCS3474OA Logical modeling approaches as a proxy to analyze cardiovascular disease trajectories

Submitted by Amel Bekkar
Affiliation: SIB | Swiss Institute of Bioinformatics
Poster Presentation
372SCS3475IK Abundance-based reconstitution of microbial pan-genomes from whole-metagenome shotgun sequencing data

Submitted by Florian Plaza Oñate
Affiliation: INRA MetaGénoPolis
Poster Presentation
375SCS3478AJ Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time

Submitted by Anna Feldmann
Affiliation: Max Planck Institute for Informatics
Poster Presentation
380SCS3486LB High-throughput Protein Functional Prediction by Data Science Approach

Submitted by Yi-Wei Liu
Affiliation: National Chengchi University, Taiwan
Poster Presentation
381SCS3487QB PROSSTT: Probabilistic Simulation of Single-cell RNA sequencing Tree-like Topologies

Submitted by Nikolaos Papadopoulos
Affiliation: Max Planck Institute for Biophysical Chemistr
Poster Presentation
382SCS3488FQ Lineage tree topology reconstruction for early myeloid progenitor cells

Submitted by Jakob El Kholtei
Affiliation: Max Planck Institute for Biophysical Chemistr
Poster Presentation
384SCS3491LB Possible polymorphic phenotypes in beta chain of human hemoglobin

Submitted by Narisetty Madhansai
Affiliation: Vignan university
Poster Presentation
387SCS3494NL An evolutionary perspective on Chemokine Receptor Family

Submitted by Tarun Jairaj Narwani
Affiliation: INSERM, U 1134, DSIMB, Univ Paris Diderot, So
Poster Presentation
388SCS3495NC An efficient contamination removal tool for improving prokaryotic genome assembly

Submitted by Diya Sen
Affiliation: CSIR Indian Institute of Chemical Biology
Poster Presentation
389SCS3496BO Development of Randomization-based enrichment analysis system

Submitted by Mikhail Grishchenko
Affiliation: Institute of Computational Mathematics and Ma
Poster Presentation

Submitted by Ingrid Tomljanovic
Affiliation: University of Zagreb
Poster Presentation
391SCS3498GN Characterization and Evolutionary study of Chemosensory receptors in Basal-Hymenoptera

Submitted by George F. Obiero
Affiliation: Max Planck Institute for Chemical Ecology
Poster Presentation
392SCS3499IK Comparative integrated-omic analyses of phage-host interactions within natural and engineered microbial communities

Submitted by Susana Martínez Arbas
Affiliation: University of Luxembourg
Poster Presentation
393SCS3500NL Comparing residue-coevolution networks across protein families

Submitted by Franco Simonetti
Affiliation: Fundacion Instituto Leloir
Poster Presentation
394SCS3502OM Construction and analysis of a comprehensive protein interaction network of HCV with its host Homo sapiens

Submitted by QuratulAin Farooq
Affiliation: Institute of Integrative Biosciences, CECOS U
Poster Presentation
395SCS3503AJ A novel primer design approach for the amplification of B cell cDNA encoding broadly neutralizing antibodies against human immunodeficiency virus

Submitted by Matthias Döring
Affiliation: Max Planck Institute for Informatics
Poster Presentation
396SCS3504CN Structural Comparison of RNA using Boolean Logic

Submitted by Diren Senger
Affiliation: University of Bremen
Poster Presentation
397SCS3505HK PopCluster: A New Algorithm to Identify Genetic Variants with Effects that Change with Ethnicity

Submitted by Anastasia Gurinovich
Affiliation: Boston University
Poster Presentation

Submitted by David Stanek
Affiliation: 1) Department of Pediatric Neurology, DNA Lab
Poster Presentation
401SCS3509AO A network approach to predict the activation of telomerase dependent and alternative mechanisms of telomere maintenance

Submitted by Lilit Nersisyan
Affiliation: Bioinformatics Group, Institute of Molecular Biology NAS RA
Poster Presentation
403SCS3511LQ Revisiting the functional classification of class A beta-lactamases

Submitted by Ana Brenda Guzovsky
Affiliation: Consejo Nacional de Investigaciones Científic
Poster Presentation
404SCS3512AB Data analysis to improve understanding and prediction of cross-resistance and epistatic interactions

Submitted by Alexander Flohr
Affiliation: Saarland University
Poster Presentation
406SCS3514OA Percolation-like phase transitions in protein-protein interaction networks of fusions reveal a discrepancy in cancer phenotypes

Submitted by Somnath Tagore
Poster Presentation
407SCS3515LQ On the role of local frustration on proteins’ catalytic sites

Submitted by Maria I Freiberger
Affiliation: Facultad de Ingenieria - Universidad Nacional
Poster Presentation
410SCS3518LQ SwissProtSelect: The New Protein Superfamily Database Implemented by HMMERCTTER for Reliable Function Assignation

Submitted by Nicolas Stocchi
Affiliation: IIB-CONICET-UNMdP
Poster Presentation
412SCS3520OA Analysing signalling-metabolic pathway information flow in EGF receptor-mediated oncogenesis of glioblastoma

Submitted by Mandloi Sapan
Affiliation: CSIR-Indian Institute of Chemical Biology
Poster Presentation
413SCS3521BA Preprocessing of high-resolution mass spectrometry imaging data with optimized hierarchical agglomerative clustering (OHAC) and Bayesian statistics

Submitted by Nazanin Zounemat Kermani
Affiliation: Imperial College London
Poster Presentation
413SCS3522OB Identifying Novel Peroxisomal Proteins by Multiple Kernel and One-Class Semi-Supervised Learning

Submitted by Nazanin Zounemat Kermani
Affiliation: Imperial College London
Poster Presentation
416SCS3525LA Structural characterization of the IC pocket in the human Cx50 hemichannel

Submitted by Claudia Pareja-Barrueto
Affiliation: Computational Biology Laboratory (DLab), Fundacion Ciencia y Vida, Santiago, Chile. Centro Interdisciplinario de Neurociencia de Valparaíso, Valparaíso, Chile.
Poster Presentation
417SCS3526GC Automated gene annotation in non-model unicellular eukaryotic genomes

Submitted by Loïc Meunier
Affiliation: University of Liege
Poster Presentation
418SCS3527FO Using Deep Learning to Infer Functional Relationships in Mouse Osteoblasts

Submitted by Evan Cofer
Affiliation: Trinity University & Princeton University
Poster Presentation
421SCS3530BA Drug Resistance Profiling of Malaria Parasitaemia using Biomedical Image Processing of Blood Sample Images

Submitted by Eustache Muteba Ayumba
Affiliation: the International Medical Informatics Association (IMIA)
Poster Presentation
422SCS3531LQ Transport pathways in membrane transport proteins.

Submitted by sayane shome
Affiliation: Iowa State University
Poster Presentation
423SCS3532OM Integration of multilevel OMICs data based on the identification of regulatory modules from protein-protein interaction networks

Submitted by Theresia Conrad
Affiliation: Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute
Poster Presentation
424SCS3533LM Problems with annotation and computational prediction of peptide amyloidogenicity

Submitted by Michał Burdukiewicz
Affiliation: University of Wrocław
Poster Presentation
425SCS3534KJ Genome-wide SNP analysis reveals distinct origins of Trypanosoma evansi and Trypanosoma equiperdum

Submitted by Bart Cuypers
Affiliation: Institute of Tropical Medicine
Poster Presentation
426SCS3535KF Phylostratigraphic analyses of Escherichia coli

Submitted by Hrvoje Mišetić
Affiliation: Ruđer Bošković Institute
Poster Presentation
427SCS3536LO RIP-MD: Generation and Analysis of Residue Interaction Networks in Molecular Dynamics of Proteins

Submitted by Sebastian Contreras-Riquelme
Affiliation: Computational Biology Lab, Fundacion Ciencia y Vida
Poster Presentation
408SCS3537QM Drug-target interaction prediction in drug repositioning and drug design

Submitted by Daniele Parisi
Affiliation: KULeuven
Poster Presentation
428SCS3538JL New binding site of the quorum sensing molecule N-3-Oxododecanoyl Homoserine Lactone with the transcriptional regulator LasR of Pseudomonas aeruginosa: Insights from Molecular Docking and Dynamics Simulations

Submitted by Grabski Hovakim
Affiliation: Russian-Armenian University
Poster Presentation
429SCS3539OB Genes Prioritization through Matrix Completion with Side Information

Submitted by Pooya Zakeri
Affiliation: KU Leuven
Poster Presentation
431SCS3541OJ Mining multiple pathogen-host interactomes for the detection of differentiating patterns

Submitted by Pieter Moris
Affiliation: UAntwerp
Poster Presentation
432SCS3542OQ MicrobiomeDB: a Web-based platform for interrogating microbiome experiments

Submitted by Francislon S. Oliveira
Affiliation: Centro de Pesquisas René Rachou (Fiocruz Minas)
Poster Presentation
433SCS3543FQ Comparative genomic, evolutionary and functional analysis of caleosins: a family of multifunctional plant and fungal proteins

Submitted by Rahman Farzana
Affiliation: University of South Wales
Poster Presentation
434SCS3544BM Formal description and reference implementation of a generic framework and a methodology for analysing molecular docking results

Submitted by Damjan Temelkovski
Affiliation: University of Westminster
Poster Presentation
435SCS3545QB Robustness of modeling-based experiment retrieval to differences in measurement and preprocessing techniques

Submitted by Pradeep Eranti
Affiliation: Aalto University
Poster Presentation
436SCS3546BA The impacts of sodium and potassium dynamics on excitability of neuron and seizures

Submitted by Seyed Ali SADEGH ZADEH
Affiliation: University of Hull
Poster Presentation
437SCS3547BA Computational methods for detection of allele specific expression and their diagnostic relevance for rare Mendelian disorders

Submitted by Numrah Fadra
Affiliation: University of Minnesota, Mayo Clinic
Poster Presentation
440SCS3552AM In Silico Identification and Screening of Compounds against the Identified Potential Drug Target of Resistant Mycobacterium tuberculosis

Submitted by Noor-Ul-Ain Zahra
Affiliation: Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center of Chemical and Biological Sciences, University of Karachi, Karachi
Poster Presentation
441SCS3554AM Core Proteome Mining of Pseudomonas aeruginosa to Identify Novel Drug Targets

Submitted by Faiza Jamil
Affiliation: Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi
Poster Presentation
444SCS3557NH Novel Dog Genome Content Revealed by Pseudo-De Novo Assembly of Unmapped Sequence Reads

Submitted by Meharji Arumilli
Affiliation: University of Helsinki
Poster Presentation
445SCS3558BA Standardisation and organisation of knowledge about neurodegenerative disease mechanisms for comparison over heterogeneous systems

Submitted by Aishwarya Alex Namasivayam
Affiliation: University of Luxembourg
Poster Presentation
447SCS3561OB NetRep: a scalable permutation approach for assessing replication and preservation of network modules in large datasets

Submitted by Scott Ritchie
Affiliation: Baker Heart and Diabetes Research Institute
Poster Presentation
448SCS3562DQ RSG-Italy showcase & activities

Submitted by Lisanna Paladin
Affiliation: Univeristà degli Studi di Padova
Poster Presentation
451SCS3565GN Unravelling the aromatic catabolism potential of the hydrocarbonoclastic marine bacterium Alcaligenes sp. QD168.

Submitted by Roberto Durán
Affiliation: Universidad Técnica Federico Santa María
Poster Presentation

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