Following abstracts were accepted for an oral presentation and a poster presentation
| # | Reference | Work Title |
|---|---|---|
| 1 | 362SCS3482IB | Fidelity of contig spectra based community modelling for estimating viral diversity measures using metaviromes Submitted by Damayanthi Herath Affiliation: University of Melbourne |
| 2 | 379SCS3484GF | Reducing Noise in Hi-C Interaction Matrices at Restriction Fragment Resolution Submitted by Christopher JF Cameron Affiliation: McGill University |
| 3 | 399SCS3507NC | SequenceServer: a modern graphical user interface for BLAST Submitted by Anurag Priyam Affiliation: Queen Mary University of London |
| 4 | 402SCS3510JL | Determining the function of the Apicomplexan 6-Cys/SRS protein family: A Structural and Evolutionary Understanding of Pathogen Invasion Submitted by Eli Draizen Affiliation: Boston University |
| 5 | 405SCS3513CB | Integrating Diverse Transcriptomic Alterations to Identify Cancer-Relevant Genes and Signatures Submitted by Natalie Davidson Affiliation: ETH Zurich |
| 6 | 415SCS3524CH | scTree: reconstructing complex cellular lineage trees from single-cell RNA-seq data Submitted by Rodrigo Gonzalo Parra Affiliation: Max Planck Institute for Biophysical Chemistry |
| 7 | 430SCS3540LK | The impact of native state switching on protein sequence evolution Submitted by Avital Sharir-Ivry Affiliation: McGill University |
Following abstracts were accepted for a short flash talk and a poster presentation
| # | Reference | Work Title |
|---|---|---|
| 9 | 366SCS3467CJ | Helminth secretomes reflect different lifestyles and parasitized hosts
Submitted by Yesid Cuesta-Astroz Affiliation: CENTRO DE PESQUISAS RENÉ RACHOU (CPqRR), FUND |
| 10 | 369SCS3471FQ | A comprehensive meta-analysis of the induced immediate early response reveals a conserved order of promoter activation Submitted by Annalaura Vacca Affiliation: Edinburgh University |
| 11 | 373SCS3476AC | Long read sequencing of two Phytophthora ramorum isolates identifies two-speed genome organization Submitted by Mathu Malar C Affiliation: Indian Institute of Chemical Biology |
| 12 | 376SCS3479FA | Predicting Abnormal Circadian Phenotypes in Mouse Submitted by John Williams Affiliation: MRC Harwell Institute |
| 13 | 377SCS3480EO | Discovery of murine tissue specific regulatory drivers and their impact Submitted by Siddharth Sethi Affiliation: MRC Harwell Institute |
| 14 | 378SCS3483AO | Differential network analysis hints at revealing mechanism of actions of combined drug applications Submitted by Mohamed Hamed Affiliation: Rostock University Medical Center |
| 15 | 385SCS3492NB | Intervene: a tool for intersection and visualization of multiple gene or genomic region sets Submitted by Aziz Khan Affiliation: University of Oslo |
| 16 | 386SCS3493AQ | TOPSPIN: a novel algorithm to predict treatment specifical survival in cancer Submitted by Joske Ubels Affiliation: UMC Utrecht |
| 17 | 348SCS3501LM | Homology modeling in a dynamical world Submitted by Alexander Monzon Affiliation: UNQ |
| 18 | 400SCS3508LM | INFLUENCE OF TEMPERATURE IN THE CONFORMATIONAL CHANGE OF ZIKA VIRUS E PROTEIN AND ITS CONSEQUENCES IN VIRAL INFECTIVITY Submitted by Gabriela Muniz Affiliation: Evandro Chagas Institute |
| 19 | 409SCS3517QL | Mining CD8+ T-cell receptor patterns underlying immunogenic peptide recognition Submitted by Nicolas De Neuter Affiliation: University of Antwerp |
| 20 | 414SCS3523BC | Algorithms for gene family silencing using the CRISPR-Cas9 system Submitted by Gal Hyams Affiliation: Tel Aviv University |
| 21 | 420SCS3529OQ | Stochastic Modeling of Gene Regulatory Networks in Escherichia coli Submitted by Rodrigo Santibáñez Affiliation: Fundación Ciencia & Vida |
| 22 | 438SCS3548OA | Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach Submitted by Mehreen Ali Affiliation: Institute for Molecular Medicine, University of Helsinki |
| 23 | 439SCS3549NM | Computational proteogenomic identification of translated fusions and micro structural variations in cancer Submitted by Yen-Yi Lin Affiliation: Simon Fraser University |
| 32 | 370SCS3472LB | Zipping and assembly with limited sets of constraints Submitted by Maryana Wånggren Affiliation: Chalmers University of Technology |
Following abstracts were accepted for poster presentation
| # | Reference | Work Title | Accepted for |
|---|---|---|---|
| 8 | 363SCS3464AB | Computational deconvolution of mixed signals in tumor microenvironment using blind source deconvolution approach
Submitted by Urszula Czerwinska Affiliation: Institut Curie |
Poster Presentation |
| 24 | 358SCS3459OA | The CD4+ T cell regulatory network mediates inflammatory responses during acute hyperinsulinemia: a simulation study Submitted by Mariana Esther Martinez-Sanchez Affiliation: Universidad Nacional Autónoma de México |
Poster Presentation |
| 25 | 359SCS3460IN | Phylogenetic identification and characterization of microbial diversity in Moroccan rivers using a metagenomics approach Submitted by Sara Ettamimi Affiliation: University Sidi Mohamed Ben Abdellah, Facuty |
Poster Presentation |
| 26 | 360SCS3461IF | HPC pipeline for metagenomics Submitted by Trust Odia Affiliation: Covenant University Bioinformatics Research G |
Poster Presentation |
| 27 | 361SCS3462OA | Identification of Common Molecular Processes for Phenotypes of interest through Common Connection Pattern: A New Method Based on Network Theory Submitted by Juan David Henao Affiliation: National University of Colombia |
Poster Presentation |
| 28 | 364SCS3465LN | Darkness and disorder: an insight on the unknown portion of proteomes Submitted by Nicola Bordin Affiliation: Universidad Pablo de Olavide |
Poster Presentation |
| 29 | 365SCS3466OA | Pan-cancer classification of gene signatures for their information value and functional redundancy Submitted by Laura Cantini Affiliation: Institut Curie, INSERM U900, PSL Research Uni |
Poster Presentation |
| 30 | 367SCS3468EA | Developing a bioinformatics pipeline for optimization of sperm epigenome analysis in mice and men to be used for the identification of epigenetic signatures in sperm associated with environmental perturbation. Submitted by Deepak Tanwar Affiliation: McGill University |
Poster Presentation |
| 31 | 368SCS3470LA | Discovery of novel hits against Leishmania spp. crystallized proteins through a structure-based methodology using grid computing Submitted by Rodrigo Ochoa Affiliation: Max Planck Tandem Group, Biophysics of Tropic |
Poster Presentation |
| 33 | 371SCS3474OA | Logical modeling approaches as a proxy to analyze cardiovascular disease trajectories Submitted by Amel Bekkar Affiliation: SIB | Swiss Institute of Bioinformatics |
Poster Presentation |
| 34 | 372SCS3475IK | Abundance-based reconstitution of microbial pan-genomes from whole-metagenome shotgun sequencing data Submitted by Florian Plaza Oñate Affiliation: INRA MetaGénoPolis |
Poster Presentation |
| 35 | 375SCS3478AJ | Prediction of HIV-1 sensitivity to broadly neutralizing antibodies shows a trend towards resistance over time Submitted by Anna Feldmann Affiliation: Max Planck Institute for Informatics |
Poster Presentation |
| 36 | 380SCS3486LB | High-throughput Protein Functional Prediction by Data Science Approach Submitted by Yi-Wei Liu Affiliation: National Chengchi University, Taiwan |
Poster Presentation |
| 37 | 381SCS3487QB | PROSSTT: Probabilistic Simulation of Single-cell RNA sequencing Tree-like Topologies Submitted by Nikolaos Papadopoulos Affiliation: Max Planck Institute for Biophysical Chemistr |
Poster Presentation |
| 38 | 382SCS3488FQ | Lineage tree topology reconstruction for early myeloid progenitor cells Submitted by Jakob El Kholtei Affiliation: Max Planck Institute for Biophysical Chemistr |
Poster Presentation |
| 39 | 384SCS3491LB | Possible polymorphic phenotypes in beta chain of human hemoglobin Submitted by Narisetty Madhansai Affiliation: Vignan university |
Poster Presentation |
| 40 | 387SCS3494NL | An evolutionary perspective on Chemokine Receptor Family Submitted by Tarun Jairaj Narwani Affiliation: INSERM, U 1134, DSIMB, Univ Paris Diderot, So |
Poster Presentation |
| 41 | 388SCS3495NC | An efficient contamination removal tool for improving prokaryotic genome assembly Submitted by Diya Sen Affiliation: CSIR Indian Institute of Chemical Biology |
Poster Presentation |
| 42 | 389SCS3496BO | Development of Randomization-based enrichment analysis system Submitted by Mikhail Grishchenko Affiliation: Institute of Computational Mathematics and Ma |
Poster Presentation |
| 43 | 390SCS3497ML | HIGH-THROUGHPUT IDENTIFICATION OF NOVEL INTRINSICALLY DISORDERED PROTEINS IN ARABIDOPSIS THALIANA DURING ABIOTIC STRESS Submitted by Ingrid Tomljanovic Affiliation: University of Zagreb |
Poster Presentation |
| 44 | 391SCS3498GN | Characterization and Evolutionary study of Chemosensory receptors in Basal-Hymenoptera Submitted by George F. Obiero Affiliation: Max Planck Institute for Chemical Ecology |
Poster Presentation |
| 45 | 392SCS3499IK | Comparative integrated-omic analyses of phage-host interactions within natural and engineered microbial communities Submitted by Susana Martínez Arbas Affiliation: University of Luxembourg |
Poster Presentation |
| 46 | 393SCS3500NL | Comparing residue-coevolution networks across protein families Submitted by Franco Simonetti Affiliation: Fundacion Instituto Leloir |
Poster Presentation |
| 47 | 394SCS3502OM | Construction and analysis of a comprehensive protein interaction network of HCV with its host Homo sapiens Submitted by QuratulAin Farooq Affiliation: Institute of Integrative Biosciences, CECOS U |
Poster Presentation |
| 48 | 395SCS3503AJ | A novel primer design approach for the amplification of B cell cDNA encoding broadly neutralizing antibodies against human immunodeficiency virus Submitted by Matthias Döring Affiliation: Max Planck Institute for Informatics |
Poster Presentation |
| 49 | 396SCS3504CN | Structural Comparison of RNA using Boolean Logic Submitted by Diren Senger Affiliation: University of Bremen |
Poster Presentation |
| 50 | 397SCS3505HK | PopCluster: A New Algorithm to Identify Genetic Variants with Effects that Change with Ethnicity Submitted by Anastasia Gurinovich Affiliation: Boston University |
Poster Presentation |
| 51 | 398SCS3506AH | PROTEIN FEATURES MAPPED TO THE HUMAN GENOME Submitted by David Stanek Affiliation: 1) Department of Pediatric Neurology, DNA Lab |
Poster Presentation |
| 52 | 401SCS3509AO | A network approach to predict the activation of telomerase dependent and alternative mechanisms of telomere maintenance Submitted by Lilit Nersisyan Affiliation: Bioinformatics Group, Institute of Molecular Biology NAS RA |
Poster Presentation |
| 53 | 403SCS3511LQ | Revisiting the functional classification of class A beta-lactamases Submitted by Ana Brenda Guzovsky Affiliation: Consejo Nacional de Investigaciones Científic |
Poster Presentation |
| 54 | 404SCS3512AB | Data analysis to improve understanding and prediction of cross-resistance and epistatic interactions Submitted by Alexander Flohr Affiliation: Saarland University |
Poster Presentation |
| 55 | 406SCS3514OA | Percolation-like phase transitions in protein-protein interaction networks of fusions reveal a discrepancy in cancer phenotypes Submitted by Somnath Tagore Affiliation: BAR-ILAN UNIVERSITY |
Poster Presentation |
| 56 | 407SCS3515LQ | On the role of local frustration on proteins’ catalytic sites Submitted by Maria I Freiberger Affiliation: Facultad de Ingenieria - Universidad Nacional |
Poster Presentation |
| 57 | 410SCS3518LQ | SwissProtSelect: The New Protein Superfamily Database Implemented by HMMERCTTER for Reliable Function Assignation Submitted by Nicolas Stocchi Affiliation: IIB-CONICET-UNMdP |
Poster Presentation |
| 58 | 412SCS3520OA | Analysing signalling-metabolic pathway information flow in EGF receptor-mediated oncogenesis of glioblastoma Submitted by Mandloi Sapan Affiliation: CSIR-Indian Institute of Chemical Biology |
Poster Presentation |
| 59 | 413SCS3521BA | Preprocessing of high-resolution mass spectrometry imaging data with optimized hierarchical agglomerative clustering (OHAC) and Bayesian statistics Submitted by nazanin Zounemat Kermani Affiliation: Imperial College London |
Poster Presentation |
| 60 | 413SCS3522OB | Identifying Novel Peroxisomal Proteins by Multiple Kernel and One-Class Semi-Supervised Learning Submitted by nazanin Zounemat Kermani Affiliation: Imperial College London |
Poster Presentation |
| 61 | 416SCS3525LA | Structural characterization of the IC pocket in the human Cx50 hemichannel Submitted by Claudia Pareja-Barrueto Affiliation: Computational Biology Laboratory (DLab), Fundacion Ciencia y Vida, Santiago, Chile. Centro Interdisciplinario de Neurociencia de Valparaíso, Valparaíso, Chile. |
Poster Presentation |
| 62 | 417SCS3526GC | Automated gene annotation in non-model unicellular eukaryotic genomes Submitted by Loïc Meunier Affiliation: University of Liege |
Poster Presentation |
| 63 | 418SCS3527FO | Using Deep Learning to Infer Functional Relationships in Mouse Osteoblasts Submitted by Evan Cofer Affiliation: Trinity University & Princeton University |
Poster Presentation |
| 64 | 421SCS3530BA | Drug Resistance Profiling of Malaria Parasitaemia using Biomedical Image Processing of Blood Sample Images Submitted by Eustache Muteba Ayumba Affiliation: the International Medical Informatics Association (IMIA) |
Poster Presentation |
| 65 | 422SCS3531LQ | Transport pathways in membrane transport proteins. Submitted by sayane shome Affiliation: Iowa State University |
Poster Presentation |
| 66 | 423SCS3532OM | Integration of multilevel OMICs data based on the identification of regulatory modules from protein-protein interaction networks Submitted by Theresia Conrad Affiliation: Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute |
Poster Presentation |
| 67 | 424SCS3533LM | Problems with annotation and computational prediction of peptide amyloidogenicity Submitted by Michał Burdukiewicz Affiliation: University of Wrocław |
Poster Presentation |
| 68 | 425SCS3534KJ | Genome-wide SNP analysis reveals distinct origins of Trypanosoma evansi and Trypanosoma equiperdum Submitted by Bart Cuypers Affiliation: Institute of Tropical Medicine |
Poster Presentation |
| 69 | 426SCS3535KF | Phylostratigraphic analyses of Escherichia coli Submitted by Hrvoje Mišetić Affiliation: Ruđer Bošković Institute |
Poster Presentation |
| 70 | 427SCS3536LO | RIP-MD: Generation and Analysis of Residue Interaction Networks in Molecular Dynamics of Proteins Submitted by Sebastian Contreras-Riquelme Affiliation: Computational Biology Lab, Fundacion Ciencia y Vida |
Poster Presentation |
| 71 | 408SCS3537QM | Drug-target interaction prediction in drug repositioning and drug design Submitted by Daniele Parisi Affiliation: KULeuven |
Poster Presentation |
| 72 | 428SCS3538JL | New binding site of the quorum sensing molecule N-3-Oxododecanoyl Homoserine Lactone with the transcriptional regulator LasR of Pseudomonas aeruginosa: Insights from Molecular Docking and Dynamics Simulations Submitted by Grabski Hovakim Affiliation: Russian-Armenian University |
Poster Presentation |
| 73 | 429SCS3539OB | Genes Prioritization through Matrix Completion with Side Information Submitted by Pooya Zakeri Affiliation: KU Leuven |
Poster Presentation |
| 74 | 431SCS3541OJ | Mining multiple pathogen-host interactomes for the detection of differentiating patterns Submitted by Pieter Moris Affiliation: UAntwerp |
Poster Presentation |
| 75 | 432SCS3542OQ | MicrobiomeDB: a Web-based platform for interrogating microbiome experiments Submitted by Francislon S. Oliveira Affiliation: Centro de Pesquisas René Rachou (Fiocruz Minas) |
Poster Presentation |
| 76 | 433SCS3543FQ | Comparative genomic, evolutionary and functional analysis of caleosins: a family of multifunctional plant and fungal proteins Submitted by Rahman Farzana Affiliation: University of South Wales |
Poster Presentation |
| 77 | 434SCS3544BM | Formal description and reference implementation of a generic framework and a methodology for analysing molecular docking results Submitted by Damjan Temelkovski Affiliation: University of Westminster |
Poster Presentation |
| 78 | 435SCS3545QB | Robustness of modeling-based experiment retrieval to differences in measurement and preprocessing techniques Submitted by Pradeep Eranti Affiliation: Aalto University |
Poster Presentation |
| 79 | 436SCS3546BA | The impacts of sodium and potassium dynamics on excitability of neuron and seizures Submitted by Seyed Ali SADEGH ZADEH Affiliation: University of Hull |
Poster Presentation |
| 80 | 437SCS3547BA | Computational methods for detection of allele specific expression and their diagnostic relevance for rare Mendelian disorders Submitted by Numrah Fadra Affiliation: University of Minnesota, Mayo Clinic |
Poster Presentation |
| 81 | 440SCS3552AM | In Silico Identification and Screening of Compounds against the Identified Potential Drug Target of Resistant Mycobacterium tuberculosis Submitted by Noor-Ul-Ain Zahra Affiliation: Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center of Chemical and Biological Sciences, University of Karachi, Karachi |
Poster Presentation |
| 82 | 441SCS3554AM | Core Proteome Mining of Pseudomonas aeruginosa to Identify Novel Drug Targets Submitted by Faiza Jamil Affiliation: Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi |
Poster Presentation |
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